3D software for serial sections
INPUT/OUTPUT:
» Support for virtual slide formats (3DHISTECH, Aperio, Hamamatsu, Huron, Leica, Nikon, Olympus, Perkin-Elmer, Roche-Ventana, TissueGnostics, Zeiss)
» Support for basic image fi le formats (.jpg, .tif)
» Support for 3D basic image fi le formats (.mhd, .mha, .nii)
» Video capture and export
» Screenshot capture and export
ALIGNMENT:
» Alignment of a set of (serial) sections
› Reconstructions of sections of any thickness (best chosen according to the tissue of interest)
› Unlimited number of slides
» Very fast (semi-) automatic process for alignment
› Automatic section separation and section ordering
› Automatic initial alignment
› Manual alignment adjustments possible
» Independence of staining and image modality
» Alignment on bright field, fluorescence, and electron microscopy data sets
RECONSTRUCTION:
» Reconstruction of a 3D image from a set of consecutive sections
» Automatic color adjustment for homogeneous results
» Compensation of deformations
» Robustness to large deformations (tears and folds in the tissue)
» Avoidance of drifts or torsions in the stack due to a minimum error propagation technology
» No memory size limits: Reconstruction of more than 1000 sections (>500 GB) possible and feasible
» Reconstruction on any magnification level, up to the scanner resolution
ADVANTAGES:
» High automation of 3D reconstruction：Save a vast amount of time in your reconstruction workflow (speed up from 2 days to 15 minutes for one data set).
» Software-based 3D reconstruction：You can reconstruct 3D volumes using virtual slide scanners – no additional expensive hardware setup is required.
» Ease of use：Non-IT personnel can easily use the software without major training or specific knowledge. An intelligent wizard concept quickly guides users through the workflow.
» 3D whole slide imaging：Access extremely large volumes (>500GB) on all magnification levels and all regions – 3D field of view can be defined after imaging instead of setting it previously as with confocal or multi-photon imaging.
» Fast volume measurement：Save up to 70% time when using our software instead of other software for volume quantification due to increased automation.
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